Fields

Molecular ecology


S41598 017 16371 9 Comparative Genomics of Color Morphs In the Coral Montastraea cavernosa | article
Jarett JK, MacManes MD, Morrow KM, Pankey MS, Lesser MP (2017)
Sci Rep 7:16039
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S41598 017 02656 6 Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks | article
Steinert G, Rohde S, Janussen D, Blaurock C, Schupp PJ (2017)
Sci Rep 7:2542
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10.7717 peerj.3532 Fungi associated with mesophotic macroalgae from the ‘Au‘au Channel, west Maui are differentiated by host and overlap terrestrial communities | article
Wainwright BJ, Zahn GL, Spalding HL, Sherwood AR, Smith CM, Amend AS (2017)
PeerJ
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10.1126   sciadv.1602373 Deep reefs are not universal refuges: Reseeding potential varies among coral species | article
Bongaerts P, Riginos C, Brunner R, Englebert N, Smith SR, Hoegh-Guldberg O (2017)
Science Advances 3:e1602373
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10.1371   journal.pone.0171768 Do the shuffle: Changes in Symbiodinium consortia throughout juvenile coral development | article
Reich HG, Robertson DL, Goodbody-Gringley G (2017)
PLoS ONE 12:e0171768
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10.1371   journal.pone.0170336 Lower Mesophotic Coral Communities (60-125 m Depth) of the Northern Great Barrier Reef and Coral Sea | article
Englebert N, Bongaerts P, Muir PR, Hay KB, Pichon M, Hoegh-Guldberg O (2017)
PLoS ONE 12:e0170336
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Costantini et al. 2016 Limited genetic connectivity between gorgonian morphotypes along a depth gradient | article
Costantini F, Gori A, Lopez-González P, Bramanti L, Rossi S, Gili JM, Abbiati M (2016)
PLoS ONE 11:e0160678
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Costantini and abbiati 2016 Into the depth of population genetics: pattern of structuring in mesophotic red coral populations | article
Costantini F, Abbiati M (2016)
Coral Reefs 35:39-52
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Peerj 1936 In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity | article
Steinert G, Taylor MW, Deines P, Simister RL, de Voogd NJ, Hoggard M, Schupp​ PJ (2016)
PeerJ 4:e1936
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Fmars 03 00195 Novel adaptive photosynthetic characteristics of mesophotic symbiotic microalgae within the reef-building coral, Stylophora pistillata | article
Eibinder S, Gruber D, Solomon E, Liran O, Keren N, Tchernov D (2016)
Front Mar Sci
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10.1128   mbio.00560 16 The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats | article
Hernandez-Agreda A, Leggat W, Bongaerts P, Ainsworth TD (2016)
mBio 7:e00560-16
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10.1111   maec.12367 Symbiodinium (internal transcribed spacer 2) diversity in the coral host Agaricia lamarcki (Cnidaria: Scleractinia) between shallow and mesophotic ... | article
Lucas MQ, Stat M, Smith MC, Weil E, Schizas NV (2016)
Mar Ecol
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10.1111   mec.13704 Repeated invasions into the twilight zone: evolutionary origins of a novel assemblage of fishes from deep Caribbean reefs | article
Tornabene L, van Tassell JL, Robertson DR, Young F, Baldwin CC (2016)
Mol Ecol
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10.1111   zoj.12394 Molecular phylogeny, analysis of character evolution, and submersible collections enable a new classification of a diverse group of gobies (Teleost... | article
Tornabene L, Van Tassell JL, Gilmore RG, Robertson DR, Young F, Baldwin CC (2016)
Zool J Linn Soc 177:764–812
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10.1038   srep21619 Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides | article
Serrano XM, Baums IB, Smith TB, Jones RJ, Shearer TL, Baker AC (2016)
Sci Rep 6:21619
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Morrow et al 2016 environmental microbiology Environmental drivers of microbial community shifts in the giant barrel sponge, Xestospongia muta, over a shallow to mesophotic depth gradient | article
Morrow KM, Fiore Cara, Lesser M (2016)
Environ Microbiol 18:2025-2038
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10.1111   jpy.12375 New Ulvaceae (Ulvophyceae, Chlorophyta) from mesophotic ecosystems across the Hawaiian Archipelago | article
Spalding HL, Conklin KY, Smith CM, O'Kelly CJ, Sherwood AR (2016)
J Phycol 52:40-53
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10.1007   s00338 015 1324 9 Variability in chemical defense across a shallow to mesophotic depth gradient in the Caribbean sponge Plakortis angulospiculatus | article
Slattery M, Gochfeld DJ, Diaz MC, Thacker RW, Lesser MP (2016)
Coral Reefs 35:11-22
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Cannas et al. 2015 New insights into connectivity patterns of mesophotic red coral (Corallium rubrum) populations | article
Cannas R, Sacco F, Cau A, Coluccia E, Follesa MC, Cau A (2015)
Hydrobiologia 759:63-73
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10.1080   17451000.2015.1013556 A new species of Longipedia Claus, 1863 (Copepoda: Harpacticoida: Longipediidae) from Caribbean mesophotic reefs with remarks on the phylogenetic a... | article
Schizas NV, Dahms H-U, Kangtia P, Corgosinho PHC, Galindo Estronza AM (2015)
Mar Biol Res 11:789-803
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10.1038   srep07652 Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community | article
Bongaerts P, Frade PR, Hay KB, Englebert N, Latijnhouwers KRW, Bak RPM, Vermeij MJA, Hoegh-Guldberg O (2015)
Sci Rep 5:7652
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10.1098   rsos.140297 Prevalent endosymbiont zonation shapes the depth distributions of scleractinian coral species | article
Bongaerts P, Carmichael M, Hay KB, Tonk L, Frade PR, Hoegh-Guldberg O (2015)
R Soc Open Sci 2:140297
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10.1038   ismej.2015.3 Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix | article
Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O (2015)
ISME J 9:1916-1927
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10.1098   rsos.140458 A spectacular new species of seadragon (Syngnathidae) | article
Stiller J, Wilson NG, Rouse GW (2015)
R Soc Open Sci 2:140458
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10.3897   bdj.3.e4180 Neoniphon pencei, a new species of holocentrid (Teleostei: Beryciformes) from Rarotonga, Cook Islands | article
Copus JM, Pyle RL, Earle JL (2015)
Biodivers Data J 3:e4180
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10.1038   ismej.2015.39 The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts | article
Ainsworth TD, Krause L, Bridge T, Torda G, Raina J-B, Zakrzewski M, Gates RD, Padilla-Gamiño JL, Spalding HL, Smith C, Woolsey ES, Bourne DG, Bongaerts P, Hoegh-Guldberg O, Leggat W (2015)
ISME J 9:2261-2274
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10.3897   bdj.3.e4902 Luzonichthys seaver, a new species of Anthiinae (Perciformes, Serranidae) from Pohnpei, Micronesia | article
Copus JM, Ka'apu-Lyons CA, Pyle RL (2015)
Biodivers Data J 3:e4902
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10.3897   zookeys.513.9998 A new, mesophotic Coryphopterus goby (Teleostei, Gobiidae) from the southern Caribbean, with comments on relationships and depth distributions with... | article
Baldwin CC, Robertson DR (2015)
Zookeys 513:123-142
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10.1098   rsos.140351 Depth specialization in mesophotic corals (Leptoseris spp.) and associated algal symbionts in Hawai‘i | article
Pochon X, Forsman ZH, Spalding HL, Padilla-Gamiño JL, Smith CM, Gates RD (2015)
R Soc Open Sci 2:140351
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10.3354   meps11108 Fluorescent proteins in dominant mesophotic reef-building corals | article
Roth MS, Padilla-Gamiño JL, Pochon X, Bidigare RR, Gates RD, Smith AM, Spalding HL (2015)
Mar Ecol Prog Ser 521:63-79
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10.3389   fmars.2015.00004 Mesophotic coral depth acclimatization is a function of host-specific symbiont physiology | article
Ziegler M, Roder CM, Büchel C, Voolstra CR (2015)
Front Mar Sci
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10.1017   s0025315413001719 Microhabitat use and photoacclimation in the clownfish sea anemone Entacmaea quadricolor | article
Dixon AK, Needham D, Al-Horani FA, Chadwick NE (2014)
Am Sci 94:473-480
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10.1111   mec.12861 Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shal... | article
Serrano X, Baums IB, O'Reilly K, Smith TB, Jones TL, Shearer TL, Nunes FLD, Baker AC (2014)
Mol Ecol 23:4226-4240
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10.1371   journal.pone.0115493 Vertical and Horizontal Genetic Connectivity in Chromis verater, an Endemic Damselfish Found on Shallow and Mesophotic Reefs in the Hawaiian Archip... | article
Tenggardjaja KA, Bowen BW, Bernardi G (2014)
PLoS ONE 9:e115493
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10.1007   s12526 014 0221 8 Deepest zooxanthellate corals of the Great Barrier Reef and Coral Sea | article
Englebert N, Bongaerts P, Muir P, Hay KB, Hoegh-Guldberg O (2014)
Mar Biodiv 45:1-2
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Costantini et al. 2013 Quantifying spatial genetic structuring in mesophotic populations of the precious coral Corallium rubrum | article
Costantini F, Carlesi L, Abbiati M (2013)
PLoS ONE 8:e61546
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Serrano 2013a Horizontal vs. vertical connectivity in Caribbean reef corals: Identifying potential sources of recruitment following disturbance | thesis
Serrano XM (2013)

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10.1371   journal.pone.0065845 Genetic Structure in the Coral, Montastraea cavernosa: Assessing Genetic Differentiation among and within Mesophotic Reefs | article
Brazeau DA, Lesser MP, Slattery M (2013)
PLoS ONE 8:e65845
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10.1371   journal.pone.0061546 Quantifying Spatial Genetic Structuring in Mesophotic Populations of the Precious Coral Corallium rubrum | article
Costantini F, Carlesi L, Abbiati M (2013)
PLoS ONE 8:e61546
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10.7717   peerj.132 Polyphyly and hidden species among Hawai'i's dominant mesophotic coral genera, Leptoseris and Pavona (Scleractinia: Agariciidae) | article
Luck DG, Forsman ZH, Toonen RJ, Leicht SJ, Kahng SE (2013)
PeerJ 1:e132
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10.1111   1574 6941.12099 Characterizing the bacterial associates of three Caribbean sponges along a gradient from shallow to mesophotic depths | article
Olson JB, Gao X (2013)
FEMS Microbiol Ecol 85:74-84
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10.1186   1471 2148 13 205 Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbea... | article
Bongaerts P, Frade PR, Ogier JJ, Hay KB, van Bleijswijk J, Englebert N, Vermeij MJA, Bak RPM, Visser PM, Hoegh-Guldberg O (2013)
BMC Evol Biol
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10.1071   mf11216 First record of photosynthetic cyanobacterial symbionts from mesophotic temperate sponges | article
Keesing JK, Usher KM, Fromont J (2012)
Mar Freshw Res 63:403-408
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Opresko 2012a Discovery of Aphanipathes verticillata (Cnidaria: Anthozoa: Antipatharia) in the Hawaiian Islands | article
Opresko DM, Wagner D, Montgomery AD, Brugler MR (2012)
Zootaxa 3348:24-39
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10.1007   s00227 012 1928 3 Characterization of the zooxanthellate and azooxanthellate morphotypes of the Mediterranean gorgonian Eunicella singularis | article
Gori A, Bramanti L, López-González P, Thoma JN, Gili J-M, Grinyó J, Uceira V, Rossi S (2012)
Mar Biol 159:1485-1496
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10.1098   rspb.2010.2321 Niche specialization of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types | article
Cooper TF, Ulstrup KE, Dandan SS, Heyward AJ, Kühl M, Muirhead A, O'Leary RA, Ziersen BEF, Van Oppen MJH (2011)
Proc Biol Sci 278:1840-1850
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10.1098   rspb.2010.1681 Azooxanthellate? Most Hawaiian black corals contain Symbiodinium | article
Wagner D, Pochon X, Irwin L, Toonen RJ, Gates RD (2011)
Proc Biol Sci 278:1323-1328
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10.1371   journal.pone.0020434 Symbiodinium Genotypic and Environmental Controls on Lipids in Reef Building Corals | article
Cooper TF, Lai M, Ulstrup KE, Saunders SM, Flematti GR, Radford B, van Oppen MJH (2011)
PLoS ONE 6:e20434
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10.1111   j.1365 294x.2011.05050.x The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brooding coral from west and east Australia | article
van Oppen MJH, Bongaerts P, Underwood JN, Peplow LM, Cooper TF (2011)
Mol Ecol 20:1647-1660
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10.3354   meps09315 Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment | article
Bongaerts P, Sampayo EM, Bridge TCL, Ridgway T, Vermeulen F, Englebert N, Webster JM, Hoegh-Guldberg O (2011)
Mar Ecol Prog Ser 439:117-126
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10.1007   s00338 011 0801 z Changes in scleractinian coral Seriatopora hystrix morphology and its endocellular Symbiodinium characteristics along a bathymetric gradient from s... | article
Nir O, Gruber DF, Einbinder S, Kark S, Tchernov D (2011)
Coral Reefs 30:1089-1100
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10.1007   s00338 011 0771 1 Low connectivity and declining genetic variability along a depth gradient in Corallium rubrum populations | article
Costantini F, Rossi S, Pintus E, Cerrano C, Gili J-M, Abbiati M (2011)
Coral Reefs 30:991-1003
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10.1007   s00338 011 0750 6 Genotypic diversity and distribution of Ostreobium quekettii within scleractinian corals | article
Gutner-Hoch E, Fine M (2011)
Coral Reefs 30:643-650
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10.1186   1471 2148 11 303 Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats | article
Bongaerts P, Riginos C, Hay KB, van Oppen MJH, Hoegh-Guldberg O, Dove S (2011)
BMC Evol Biol
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10.1371   journal.pone.0010871 Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium | article
Bongaerts P, Riginos C, Ridgway T, Sampayo EM, van Oppen MJH, Englebert N, Vermeulen F, Hoegh-Guldberg O (2010)
PLoS ONE 5:e10871
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10.1071   is10004 Using morphometrics, in situ observations and genetic characters to distinguish among commercially valuable Hawaiian black coral species; a redescr... | article
Wagner D, Brugler MR, Opresko DM, France SC, Montgomery AD, Toonen RJ (2010)
Invertebr Syst 24:271-290
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10.1890   09 0313.1 Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics | article
Lesser MP, Slattery M, Stat M, Ojimi M, Gates RD, Grottoli A (2010)
Ecology 91:990-1003
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10.1007   s00338 008 0435 y Deep zooxanthellate corals at the high latitude Bermuda Seamount | article
Venn AA, Weber FK, Loram JE, Jones RJ (2009)
Coral Reefs 28:135 - 135
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10.1186   1472 6785 9 21 Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris | article
Chan YL, Pochon X, Fisher MA, Wagner D, Concepcion GT, Kahng SE, Toonen RJ, Gates RD (2009)
BMC Ecol
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Pyle 2008a Five new species of the damselfish genus Chromis (Perciformes: Labroidei: Pomacentridae) from deep coral reefs in the tropical western Pacific | article
Pyle RL, Earle JL, Greene BD (2008)
Zootaxa 1671:3-31
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10.1111   j.1365 294x.2007.03612.x Variation in symbiont distribution between closely related coral species over large depth ranges | article
Frade PR, De Jongh F, Vermeulen F, van Bleijswijk J, Bak RPM (2008)
Mol Ecol 17:691-703
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10.4319   lo.2008.53.6.2711 In situ photobiology of corals over large depth ranges: A multivariate analysis on the roles of environment, host, and algal symbiont | article
Frade PR, Bongaerts P, Winkelhagen AJS, Tonk L, Bak RPM (2008)
Limnol Oceanogr 53:2711-2723
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10.1111   j.1439 0485.1997.tb00444.x Trophic potential and photoecology of endolithic algae living within coral skeletons | article
Schlichter D, Kampmann H, Conrady S (1997)
Mar Ecol 18:299-317
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Klein 1993 Depth-related timing of density band formation in Porites spp. corals from the Red Sea inferred from X-ray chronology and stable isotope composition | article
Klein R, Pätzold J, Wefer G, Loya Y (1993)
Mar Ecol Prog Ser 7:99-104
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10.1007   bf00391957 Resource partitioning by reef corals as determined from stable isotope composition | article
Muscatine L, Porter JW, Kaplan IR (1989)
Mar Biol 100:185-193
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Schlichter 1988 Evidence for PAR enhancement by reflection, scattering and fluorescence in the symbiotic deep-water coral Leptoseris fragilis (PAR = photosynthetic... | article
Schlichter D, Fricke HW, Weber W (1988)
Endocytobiosis Cell Res 5:83-94
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10.1007   bf00392885 A chromatophore system in the hermatypic, deep-water coral Leptoseris fragilis (Anthozoa: Hexacorallia) | article
Schlichter D, Weber W, Fricke HW (1985)
Mar Biol 89:143-147
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