Please note that only publications relevant to mesophotic reefs are indexed.

	New records of fishes from Johnston Atoll, with notes on biogeography | article Kosaki RK, Pyle RL, Randall JE, Irons DK (1991) Pac Sci 45:186-203
	Theme section on 'Mesophotic Coral Ecosystems: Characterization, Ecology, and Management' | article Hinderstein LM, Marr JCA, Martinez FA, Dowgiallo MJ, Puglise KA, Pyle RL, Zawada DG, Appeldoorn R (2010) Coral Reefs 29:247-251
	Mesophotic surveys of the flora and fauna at Johnston Atoll, Central Pacific Ocean | article Wagner D, Kosaki RK, Spalding HL, Whitton RK, Pyle RL, Sherwood AR, Tsuda RT, Calcinai B (2014) Mar Biodivers Rec 7:e68
	New Records of Commercially Valuable Black Corals (Cnidaria: Antipatharia) from the Northwestern Hawaiian Islands at Mesophotic Depths | article Wagner D, Papastamatiou YP, Kosaki RK, Gleason KA, McFall GB, Boland RC, Pyle RL, Toonen RJ (2011) Pac Sci 65:249-255
	Five new species of the damselfish genus Chromis (Perciformes: Labroidei: Pomacentridae) from deep coral reefs in the tropical western Pacific | article Pyle RL, Earle JL, Greene BD (2008) Zootaxa 1671:3-31
	Luzonichthys seaver, a new species of Anthiinae (Perciformes, Serranidae) from Pohnpei, Micronesia | article Copus JM, Ka'apu-Lyons CA, Pyle RL (2015) Biodivers Data J 3:e4902
	Neoniphon pencei, a new species of holocentrid (Teleostei: Beryciformes) from Rarotonga, Cook Islands | article Copus JM, Pyle RL, Earle JL (2015) Biodivers Data J 3:e4180
	Field comparison of open-circuit scuba to closed-circuit rebreathers for deep mixed-gas diving operations | article Parrish FA, Pyle RL (2002) Mar Technol Soc J 36:13-22
	Assessing Undiscovered Fish Biodiversity on Deep Coral Reefs Using Advanced Self-Contained Diving Technology | article Pyle RL (2000) Mar Technol Soc J 34:82-91
	Exploring deep coral reefs: How much biodiversity are we missing? | article Pyle RL (1996)
	100% endemism in mesophotic reef fish assemblages at Kure Atoll, Hawaiian Islands | article Kosaki RK, Pyle RL, Leonard JC, Hauk BB, Whitton RK, Wagner D (2016) Marine Biodiversity 47:783-784
	To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? | review Laverick JH, Andradi-Brown DA, Exton DA, Bongaerts P, Bridge TCL, Lesser MP, Pyle RL, Slattery M, Wagner D, Rogers AD (2016) Environ Evid 5:1-8
	Prognathodes basabei, a new species of butterflyfish (Perciformes, Chaetodontidae) from the Hawaiian Archipelago | article Pyle RL, Kosaki RK (2016) Zookeys 614:137-152
	Compound-specific isotopic analysis of amino acids reveals dietary changes in mesophotic coral-reef fish | article Bradley CJ, Longenecker K, Pyle RL, Popp BN (2016) Mar Ecol Prog Ser 558:65-79
	A review of the use of closed-circuit rebreathers for scientific diving | review Sieber A, Pyle R (2010) Underwater Technology 29:73-78
	Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis “marshi”(Family Lutjanidae) reveal concordant genetic structure acro... | article Andrews KR, Moriwake VN, Wilcox C, Grau EG, Kelley C, Pyle RL, Bowen BW (2014) PLoS ONE 9:e91665
	Mesophotic coral ecosystems are threatened and ecologically distinct from shallow water reefs | article Rocha LA, Pinheiro HT, Shepherd B, Papastamatiou YP, Luiz OJ, Pyle RL, Bongaerts P (2018) Science
	Three new species of labrid fishes of the genus Cirrhilabrus from islands of tropical Pacific | article Randall JE, Pyle RL (2001) Aqua Int J Ichthyol 4:89-98
	Synodus orientalis, a new lizardfish (Aulopiformes: Synodontidae) from Taiwan and Japan, with correction of the Asian record of S. lobeli | article Randall JE, Pyle RL (2008) Zool Stud 47:657-662
	To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? A systematic review | review Laverick JH, Piango S, Andradi‑Brown DA, Exton DA, Bongaerts P, Bridge TCL, Lesser MP, Pyle RL, Slattery M, Wagner D, Rogers AD (2018) Environ Evid
	Three New Species of Labrid Fishes of the Genus Cirrhilabrus from the Islands of the Tropical Pacific | article Randall JE, Pyle EL (2001) J Ichthyol 4:89-98
	Three new species of Chromis (Teleostei, Pomacentridae) from mesophotic coral ecosystems of the Philippines | article Arango BG, Pinheiro HT, Rocha C, Greene BD, Pyle RL, Copus JM, Shepherd B, Rocha LA, Rocha LA (2019) Zookeys 835:1-15
	Exploring the Biodiversity of Understudied Benthic Taxa at Mesophotic and Deeper Depths: Examples From the Order Zoantharia (Anthozoa: Hexacorallia) | article Reimer JD, Kise H, Santos MEA, Lindsay DJ, Pyle RL, Copus JM, Bowen BW, Nonaka M, Higashiji T, Benayahu Y (2019) Front Mar Sci 6:305